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Published Articles >> Table of Contents >> Abstract
Sixth IEEE International Symposium on Cluster Computing and the Grid Workshops (CCGRIDW'06)
p. 39
Building Cyberinfrastructure for Bioinformatics Using Service Oriented Architecture
Wilfred W. Li, University of California, San Diego, USA
Sriram Krishnan, University of California, San Diego, USA
Kurt Mueller, University of California, San Diego
Kohei Ichikawa, Osaka University, Japan
Susumu Date, Osaka University, Japan
Sargis Dallakyan, Scripps Research Institute
Michel Sanner, Scripps Research Institute
Chris Misleh, University of California, San Diego, USA
Zhaohui Ding, Jilin University, China
Xiaohui Wei, Jilin University, China
Osamu Tatebe, AIST, Japan
Peter W. Arzberger, University of California, San Diego, USA
Full Article Text:
 
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/CCGRID.2006.124
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| Abstract |
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Cyberinfrastructure makes the development and
deployment of bioinformatics applications easier by providing
the framework and components that may be loosely coupled
using service oriented architecture. Here we describe an end to
end prototype environment that allows existing applications to
run on the grid, taking advantage of open source software that
provides a portal interface using GridSphere, with transparent
GSI authentication using GAMA, a web service wrapper using
Opal, a metascheduler using CSF4, a virtual filesystem using
Gfarm, and a grid-enabled cluster environment using Rocks.
Solutions to complex problems may be developed using workflow
tools such as Kepler that coordinate different interoperable
services. The availability of this type of cyberinfrastructure
suggests that new applications should be designed with the grid
in mind, using service oriented architecture for interoperability
and efficiency. This approach may enable bioinformaticians to
focus on their problems of interest, and make use of the emerging
cyberinfrastructure through virtually "drag and drop"
deployment.
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 Additional Information
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Index Terms- grid, bioinformatics, deployment, workflows,
portals, metascheduler.
Citation:
Wilfred W. Li, Sriram Krishnan, Kurt Mueller, Kohei Ichikawa, Susumu Date, Sargis Dallakyan, Michel Sanner, Chris Misleh, Zhaohui Ding, Xiaohui Wei, Osamu Tatebe, Peter W. Arzberger,
"Building Cyberinfrastructure for Bioinformatics Using Service Oriented Architecture,"
ccgrid,
p. 39,
Sixth IEEE International Symposium on Cluster Computing and the Grid Workshops (CCGRIDW'06),
2006
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